PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_08220.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 313aa    MW: 35787.2 Da    PI: 5.8816
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_08220.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.69.3e-14711711128
                      NAM  11 deelvveyLkkkvegkkleleevikevdiykv.ePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWkatgkdkevls 94 
                              +++l+  yL + v+g ++++ + i+ vd+y   +P++L   ++++++  y F++ +k +a +g++ +r    g+W  +  +++v++
  Sme2.5_08220.1_g00001.1   7 EQQLL-GYLLRYVTGVPIQC-DRIRYVDLYGNkKPSELF-DTTTTNHYHYVFTRLKKVKAeNGNNFSRRFVGGTWTRKAATRPVYN 89 
                              55666.8*************.88******97549****6.44455566688887666554279999999999************** PP

                      NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                              k+++++g k+ + f    +   ++  W m ey+l
  Sme2.5_08220.1_g00001.1  90 KERSEIGFKRAFRFD---E---NNLAWYMTEYHL 117
                              **************7...2...3579******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.1871144IPR003441NAC domain
PfamPF023651.8E-67117IPR003441NAC domain
SuperFamilySSF1019411.96E-1510143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGMNINEQQL LGYLLRYVTG VPIQCDRIRY VDLYGNKKPS ELFDTTTTNH YHYVFTRLKK  60
VKAENGNNFS RRFVGGTWTR KAATRPVYNK ERSEIGFKRA FRFDENNLAW YMTEYHLSDR  120
ILEDLRLRGQ IPHEVFVVCR IRCTVITENF AVNSVPISSS QCQETVKSFA QENQDLRQSN  180
VISNGNVIRP VSLVLKESNV TQLQCSVPVA HQETPSVSYV AREEECSVPV VHQENPSVSL  240
PANESNVVAA KEEESSAHPD NDIASYHKKL DAYAASVLET MVPYIPEPPQ EDDADSIRLF  300
CEDFYIGYTN LWS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755147e-38HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064738.11e-121PREDICTED: uncharacterized protein LOC107009957
TrEMBLM1C7F51e-115M1C7F5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000613901e-115(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33811041
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.16e-10NAC domain containing protein 2